Constructing Entropy Plot from Multiple Sequence Alignment

By

Entropy Plot

The entropy in sequence analysis refers to the measure of the variation of characters (column) in multiple sequences. Entropy plot through multiple sequence alignment can be predicted using different types of entropy formulas, namely Shannon's Entropy, Schneider's Entropy, Shenkin's Entropy, Gerstein's Entropy, and Gap normalized Entropy.

Prediction of entropy plot consists of two phases: (i) performing multiple sequence alignment and consensus, and (ii) calculation of entropy number for each column through consensus of multiple sequence alignment. The entropy plot is generated by plotting vertical lines in the order of the consensus sequence on the x-axis, and the entropy number on the y-axis. This simple video tutorial demonstrates how to predict entropy plot through multiple sequence alignment. The tools used in this tutorial are ClustalW, and Entropy Plotter.

Note: We can choose any multiple sequence alignment tool, but the alignment output must be FASTA file format.

Comments

Post a Comment

Most Popular Posts

TNEB Bill Calculator

By
Image
நீங்கள் வீட்டில் இருந்தபடியே உங்கள் மின் உபயோக கட்டணத் தொகை சுலபமாக அறிந்து கொள்ளலாம். TNEB Bill Calculator - 2022 (Revised on September 09, 2022) For Domestic Usage Only Units Consumed: Units ( u ) Subsidy (≤ 100 u ) Unit Range Unit Cost From To ≤ 100 ₹ 4.50 × u 1 100 ₹ 0.00 ≤ 200 ₹ 450 1 100 ₹ 0.00 101 200 ₹ 2.25 ≤ 400 ₹ 450 1 100 ₹ 0.00 101
Read more

TNEB Bill Calculator (New)

By
Image
நீங்கள் வீட்டில் இருந்தபடியே உங்கள் மின் உபயோக கட்டணத் தொகை சுலபமாக அறிந்து கொள்ளலாம். TNEB Bill Calculator - 2023 ( Revised on September 09, 2022 ) For Domestic Usage Only Units Consumed: Units ( u ) Subsidy (≤ 100 u ) Unit Range Unit Cost From To ≤ 100 ₹ 4.50 × u 1 100 ₹ 0.00 ≤ 200 ₹ 450 1 100 ₹ 0.00 101 200 ₹ 2.25 ≤ 400 ₹ 450 1 100 ₹ 0.00 101 200 ₹ 2.25 201 400 ₹ 4.50 ≤ 500 ₹ 450 1 100 ₹ 0.00 101 200 ₹ 2.25 201 400 ₹ 4.50 401 500 ₹ 6.00 ≤ 600 ₹ 450 1 100 ₹ 0.00 101 400 ₹ 4.50 401 500 ₹ 6.00 501 600 ₹ 8.00 ≤ 800 ₹ 450 1 100 ₹ 0.00
Read more

Technical Questions

By
Image
1.You have been asked to review instructions in a .PDF file, but the file doesn't open. What is a typical troubleshooting step for this issue? Reinstall or update Adobe Reader Ask for another copy of the file Open the file with Notepad Convert the file to a different format 2. In Windows Vista, Windows 7, or Windows 8, what is the Snipping Tool used for? To create audio snippets To crop photos uploaded from a camera To edit movies To capture and create screenshots 3. An application is not responding; how would you force the application to close? Restart the computer Click on the red X icon on the application Open the task manager, select the application, and click End Task Open Programs and Features, select the application, and click Uninstall 4. In Windows Vista, Windows 7, and Windows 8 where are recently downloaded files stored by default? C:\Users\username\Downloads\ C:\Documents and Settings\username\Downloads\ C:\Program Files\ C:\P
Read more